Over 200 new sequences are generated for members of the genus
The genus
The diversity of fungi throughout the
The number of previously phylogenetically unstudied fungi is large.
Currently, there are approximately 95 named
Because of the high biodiversity within
In the present study we present the results of the LSU and small subunit
(SSU) phylogenetic analyses for the majority of
Two separate sets of data matrices were assembled
(
List of
–
Ex-type of
–
–
Ex-type of
–
–
–
Ex-type of
–
–
–
–
–
–
–
Ex-type of
Ex-type of
Ex-type of
Ex-type of
–
Ex-type of
Ex-type of
Ex-type of
Ex-type of
–
Previously identified as
Ex-type of
Ex-type of
UAMH 9995
Ex-type of
UAMH 6508
AY378154
Ex-type of
Ex-type of
Ex-type of
Ex-type of
Ex-type of
Authentic strain of
Ex-type of
In CBS as
–
Ex-type of
Ex-type of
det 267B
–
Ex-type of
Ex-type of
Ex-type of
Ex-type of
Ex-type of
Ex-type of
Ex-type of
Ex-type of
Ex-type of
In CBS as
In CBS as
–
Ex-type of
Ex-type of
Ex-type of
Ex-type of
Ex-type of
Ex-type of
OMH F1648.97
OMH F2365.97
OMH F2969.97
OMH F3691.97
In CBS as
In CBS as
In CBS as
Ex-type of
Ex-type of
–
Ex-type of
Ex-type of
–
Ex-type of
Ex-type of
Ex-type of
Ex-type of
Ex-type of
Ex-type of
Ex-type of
Ex-type of
Ex-type of
Ex-type of
Ex-type of
Ex-type of
In CBS as
Ex-type of
In CBS as
In CBS as
In CBS as
Ex-type of
Ex-type of
Ex-type of
In CBS as
Ex-type of
In CBS as
In CBS as
CCFC 226570
AY283559
Identified as
In CBS as
Ex-type of
Ex-type of
Ex-type of
AR 2674
U17411
Anamorph is
Atypical monophialidic isolate,
Atypical isolate
Ex-type of
Ex-type of
Ex-type of
NRRL 20583
Ex-type of
Ex-type of
Ex-type of
Ex-type of
Ex-type of
Ex-type of
Ex-type of
Ex-type of
JY03-006
Ex-type of
KAS 965
Ex-type of
Ex-type of
Ex-type of
AF096194
Ex-type of `
DAOM 208997
U69891
ATCC 36477
U69889
In CBS as
–
Ex-type of
In CBS as
DNA was extracted with a FastDNA kit (Qbiogene, Heidelberg, Germany) from
mycelium grown for 5–14 d in liquid Complete Medium
(
Sequences were assembled and edited using SeqMan II software (DNAStar,
Inc., Madison, Wis.). Manual alignments were performed using MacClade v. 4.08
(
A total of 228 new sequences were generated for
As shown in
A–C. The phylogenetic position of
The
A–E. The phylogenetic position of
Another major hypocrealean
The next clade in
The
Another major, well supported bionectriaceous subclade associated with the
Adjacent and loosely linked to the bionectriaceous clades in
Below the
Below the
The
Basally in the
A distant outlier is
A number of genera in addition to
The main morphotaxonomic groundwork for
Gams (
Despite the rigorous approach and the discovery of new, useful characters,
a number of the morphotaxonomic species names ultimately were applied in the
CBS collection to phylogenetically divergent organisms. Six distinct taxa from
CBS investigated in this study were identified as
Gams (
The type section
The convergence among isolates of phylogenetically remote species is
remarkable. An unknown proportion of the literature on
Besides the four clades mentioned above,
Other anomalous elements of
The main heterogeneous element included in Gams'
(
Other species included by Gams
(
The main purpose of this study is to provide a phylogenetic overview of
The first task at hand is to establish what
Other candidate isolates included
Based on these analyses, three genera are represented in sufficient detail
and with high bootstrap support to be formally recognised here. In most cases,
the genera and clades are not sufficiently populated with their constituent
members without analysis of additional sequences. For example, the
The core clade of
The generic characters do not differ significantly from those summarised in
the generic diagnosis of Dickinson
(
≡ ≡ = ≡
For additional synonyms, see Gams
(
[= ≡
The name lacks an ex-type isolate. Although the isolate
(
≡ ≡
Additional synonyms are given by Gams
(
≡ =
As mentioned above in the discussion of the genus, Kiyuna
This newly described species is phylogenetically placed by its original
authors (
The genus
The genus
The genus
Colonies on 2 % malt extract agar slimy-glabrous to moderately floccose to
deeply dusty, sometimes ropy; with, in Gams' terminology
(
Several species of
The recognised species are given below.
A description and synonymy are given by Gams & Hawksworth
(
≡ ≡
This species was described by Gams
(
As indicated by Gams (
This species was described by Gams
(
= =
Additional synonyms and a description of
The sequences deposited in GenBank by Novicki
≡ ≡
This species was described by Gams
(
Descriptions of
This economically important maize endophyte species fits the description
given by Gams (
A significant theme of the current volume is the pioneering of a new
approach to dikaryomycete nomenclature: the unitary naming of genus-level
clades based on the oldest valid generic name, whether originally anamorphic
or teleomorphic in nature (see discussion in
The genus
A.
The small, tightly unified clade of
The four species studied here,
As
= =
Older synonymy for the genus is given by Rifai & Cooke
(
Various taxa described as
Synonymy is given in MycoBank record
≡
As pointed out by Seifert
With phylogenetic hindsight, the photographs of this species' anamorph in
the original description by von Arx
The relationship of the recently described
If recombined into
Existing morphological keys and descriptions not just in
We greatly thank Arien van Iperen, Bert Gerrits-van den Ende, and Kasper
Luijsterburg for essential technical support in this study, as well as Keith
Seifert and Steve Rehner for scientific contributions. Key work was done by
co-op students Salvatore Lopes, Saghal Ahmed-Suleyman, Arwin van der Rhee, and
Nienke Lancee as well as visiting Canadian student Jonathan Shapero. For
sending type cultures, we thank Akira Nakagiri of the NITE Biological Resource
Centre Fungi collection and Françoise Symoens of the BCCM-IHEM
collection. The staff of the CBS Collection deserve special thanks for strain
cultivation and additional work. The encouragement and mentorship of Walter
Gams is highly appreciated, and we hope our partial resolution of the dilemmas
posed by phylogenetic systematics in